it is more likely your having issues with an anti virus product that is getting in the way than your proxy Restart the operating system in '''[http://en.wikipedia.org/wiki/Safe_mode safe mode with Networking]'''. This loads only the very basics needed to start your computer while enabling an Internet connection. Click on your operating system for instructions on how to start in safe mode: [http://windows.microsoft.com/en-us/windows-8/windows-startup-settings-safe-mode Windows 8], [http://windows.microsoft.com/en-us/windows/start-computer-safe-mode#start-computer-safe-mode=windows-7 Windows 7], [http://windows.microsoft.com/en-us/windows/start-computer-safe-mode#start-computer-safe-mode=windows-vista Windows Vista], [http://www.microsoft.com/resources/documentation/windows/xp/all/proddocs/en-us/boot_failsafe.mspx?mfr=true" Windows XP], [http://support.apple.com/kb/ht1564 OSX] ; If safe mode for the operating system fixes the issue, there's other software in your computer that's causing problems. Possibilities include but not limited to: AV scanning, virus/malware, background downloads such as program updates.

Sorry I have forgot to tell that I use Ubuntu14.04. I have no anti virus software installed.

<blockquote> Is there any problem if the connection is proxied </blockquote> If the hostel Internet connection does not allow ports for IMAP, POP, and SMTP I don't think you can use Thunderbird. Then your best bet is webmail (via the proxy).

I don't think they would have blocked IMAP or POP,because it is only to block unwanted websites like youtube,hacking sites(which may be misused).